Subprogram m_af_advance::af_advance (tree, dt, dt_lim, time, i_cc, time_integrator, forward_euler, implicit_solver): check whether time in sub-steps is accurate with some test
Subprogram m_af_core::af_add_cc_variable (tree, name, write_out, n_copies, ix, write_binary): ix as third argument?
Subprogram m_af_core::get_free_ids (tree, ids): when doing AMR in parallel, perhaps move some of the code outside the critical construct
Subprogram m_af_ghostcell::gc2_prolong_rb (tree, id, nb, iv, nc, cc): make compatible with arbitrary number of ghost cells
Subprogram m_af_interp::af_interp0_to_grid (tree, r, iv, amount, to_density): Support cylindrical coordinates
Module m_af_multigrid: How to use box tag with different types of operators?
Subprogram m_af_multigrid::mg_box_lpld_lsf_stencil (box, mg, ix): This is not fully accurate when there is both a change in epsilon and a boundary for the same cell
Subprogram m_af_multigrid::mg_compute_phi_gradient (tree, mg, i_fc, fac, i_norm): Solution on coarse grid can lead to large gradient due to inconsistencies with level set function
Subprogram m_af_particles::particles_to_grid_1 (tree, iv, get_rw, ids, threads, n_particles, density, p_offset): Support cylindrical coordinates
Module m_vtk: Document this module
Module m_write_silo: Document the functions in this module