poisson_dielectric.f90

Example showing how to include a dielectric object. Warning: the functionality is not fully ready.

Example showing how to include a dielectric object. Warning: the functionality is not fully ready

#include "../src/cpp_macros.h"
!> \example poisson_dielectric.f90
!>
!> Example showing how to include a dielectric object. Warning: the
!> functionality is not fully ready
program dielectric_test
  use m_af_all
  use m_gaussians
 
  implicit none
 
  integer, parameter :: box_size     = 8
  integer, parameter :: n_iterations = 10
  integer            :: i_phi
  integer            :: i_rhs
  integer            :: i_tmp
  integer            :: i_eps
 
  ! The dielectric constant used in this example
  double precision, parameter :: epsilon_high = 10.0_dp
 
  type(af_t)        :: tree
  type(ref_info_t)   :: ref_info
  integer            :: mg_iter
  real(dp)           :: residu(2)
  character(len=100) :: fname
  type(mg_t)        :: mg
  integer            :: count_rate, t_start, t_end
 
  print *, "****************************************"
  print *, "Warning: functionality demonstrated here is not fully ready"
  print *, "For large epsilon, convergence will probably be slow"
  print *, "****************************************"
  print *, "Number of threads", af_get_max_threads()
 
  call af_add_cc_variable(tree, "phi", ix=i_phi)
  call af_add_cc_variable(tree, "rhs", ix=i_rhs)
  call af_add_cc_variable(tree, "tmp", ix=i_tmp)
  call af_add_cc_variable(tree, "eps", ix=i_eps)
 
  ! Initialize tree
  call af_init(tree, & ! Tree to initialize
       box_size, &     ! A box contains box_size**DIM cells
       [dtimes(1.0_dp)], &
       [dtimes(box_size)])
 
  call af_print_info(tree)
 
  call system_clock(t_start, count_rate)
  do
     ! For each box, set the initial conditions
     call af_loop_box(tree, set_init_cond)
 
     ! This updates the refinement of the tree, by at most one level per call.
     call af_adjust_refinement(tree, ref_routine, ref_info)
 
     ! If no new boxes have been added, exit the loop
     if (ref_info%n_add == 0) exit
  end do
  call system_clock(t_end, count_rate)
 
  ! Average epsilon on coarse grids. In the future, it could be better to define
  ! epsilon on cell faces, and to perform this restriction in a matrix fashion:
  ! A_coarse = M_restrict * A_fine * M_prolong (A = matrix operator, M = matrix)
  call af_restrict_tree(tree, [i_eps])
 
  write(*,"(A,Es10.3,A)") " Wall-clock time generating AMR grid: ", &
       (t_end-t_start) / real(count_rate,dp), " seconds"
 
  call af_print_info(tree)
 
  ! Set the multigrid options.
  tree%mg_i_eps = i_eps
  mg%i_phi = i_phi ! Solution variable
  mg%i_rhs = i_rhs ! Right-hand side variable
  mg%i_tmp = i_tmp ! Variable for temporary space
  mg%sides_bc => sides_bc
 
  ! Initialize the multigrid options. This performs some basics checks and sets
  ! default values where necessary.
  ! This routine does not initialize the multigrid variables i_phi, i_rhs
  ! and i_tmp. These variables will be initialized at the first call of mg_fas_fmg
  call mg_init(tree, mg)
 
  print *, "Multigrid iteration | max residual | max error"
  call system_clock(t_start, count_rate)
 
  do mg_iter = 1, n_iterations
     ! Perform a FAS-FMG cycle (full approximation scheme, full multigrid). The
     ! third argument controls whether the residual is stored in i_tmp. The
     ! fourth argument controls whether to improve the current solution.
     call mg_fas_fmg(tree, mg, .true., mg_iter>1)
 
     ! Determine the minimum and maximum residual and error
     call af_tree_min_cc(tree, i_tmp, residu(1))
     call af_tree_max_cc(tree, i_tmp, residu(2))
     write(*,"(I8,Es14.5)") mg_iter, maxval(abs(residu))
 
     write(fname, "(A,I0)") "output/dielectric_" // dimname // "_", mg_iter
     call af_write_silo(tree, trim(fname))
  end do
  call system_clock(t_end, count_rate)
 
  write(*, "(A,I0,A,E10.3,A)") &
       " Wall-clock time after ", n_iterations, &
       " iterations: ", (t_end-t_start) / real(count_rate, dp), &
       " seconds"
 
  ! This call is not really necessary here, but cleaning up the data in a tree
  ! is important if your program continues with other tasks.
  call af_destroy(tree)
 
contains
 
  ! Set refinement flags for box
  subroutine ref_routine(box, cell_flags)
    type(box_t), intent(in) :: box
    integer, intent(out)     :: cell_flags(DTIMES(box%n_cell))
    real(dp)                 :: eps_min, eps_max
 
    eps_min = minval(box%cc(dtimes(:), i_eps))
    eps_max = maxval(box%cc(dtimes(:), i_eps))
 
    if ((box%lvl < 5 .and. eps_max > eps_min) .or. box%lvl < 2) then
       cell_flags(dtimes(:)) = af_do_ref
    else
       cell_flags(dtimes(:)) = af_keep_ref
    end if
  end subroutine ref_routine
 
  ! This routine sets the initial conditions for each box
  subroutine set_init_cond(box)
    type(box_t), intent(inout) :: box
    integer                      :: IJK, nc
    real(dp)                     :: rr(NDIM)
    real(dp)                     :: ellips_fac(NDIM)
 
    nc = box%n_cell
 
    ! Create ellipsoidal shape
    ellips_fac(2:) = 3.0_dp
    ellips_fac(1)  = 1.0_dp
 
    do kji_do(0,nc+1)
       rr = af_r_cc(box, [ijk])
 
       ! Change epsilon in part of the domain
       if (norm2((rr - 0.5_dp) * ellips_fac) < 0.25_dp) then
          box%cc(ijk, i_eps) = epsilon_high
       else
          box%cc(ijk, i_eps) = 1.0_dp
       end if
 
       box%cc(ijk, i_rhs) = 0.0d0
       box%cc(ijk, i_phi) = 0.0d0
    end do; close_do
 
  end subroutine set_init_cond
 
  ! This routine sets boundary conditions for a box
  subroutine sides_bc(box, nb, iv, coords, bc_val, bc_type)
    type(box_t), intent(in) :: box
    integer, intent(in)     :: nb
    integer, intent(in)     :: iv
    real(dp), intent(in)    :: coords(NDIM, box%n_cell**(NDIM-1))
    real(dp), intent(out)   :: bc_val(box%n_cell**(NDIM-1))
    integer, intent(out)    :: bc_type
    integer                 :: nc
 
    nc = box%n_cell
 
    ! Below the solution is specified in the approriate ghost cells
    select case (nb)
    case (af_neighb_lowx)             ! Lower-x direction
       bc_type = af_bc_dirichlet
       bc_val = 0.0_dp
    case (af_neighb_highx)             ! Higher-x direction
       bc_type = af_bc_dirichlet
       bc_val = 1.0_dp
    case default
       bc_type = af_bc_neumann
       bc_val = 0.0_dp
    end select
  end subroutine sides_bc
 
end program dielectric_test